PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G0025
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SRS
Protein Properties Length: 307aa    MW: 34093.9 Da    PI: 8.1359
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G0025genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702228.21.5e-70832422154
       DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrel....kskkqsalsstklssa 94 
                  r+g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqqla++++++++++ + + +kr++e+      ++  +l++t+ls +
  Gh_D06G0025  83 RQGGINCQDCGNQAKKDCLHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLATLQQQQEQQQfRGEIPKRQKENqggvVVTAVPSLACTRLSPT 180
                  67999*****************************************************9999888777788888888767766677788888888766 PP

       DUF702  95 esk..keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                  ++   + le  ++P+evss+avfrcv+vs++dd +ee+aYqtav+i+GhvfkGiLydqG+e+
  Gh_D06G0025 181 TTAttSGLELGQFPPEVSSQAVFRCVKVSAMDDVDEEFAYQTAVNIAGHVFKGILYDQGPES 242
                  554015567778************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.4E-6686241IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.7E-2788130IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.6E-26192240IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MAGFFYLTGN KQEDKEESLH LYRNEEIYNS NNRGFEIWPQ YYYQQPQQAN VVSSTYPFGT  60
GPSRRTIAGG FNLSDESSSS RLRQGGINCQ DCGNQAKKDC LHLRCRTCCK SRGFQCQTHV  120
KSTWVPAAKR RERQQQLATL QQQQEQQQFR GEIPKRQKEN QGGVVVTAVP SLACTRLSPT  180
TTATTSGLEL GQFPPEVSSQ AVFRCVKVSA MDDVDEEFAY QTAVNIAGHV FKGILYDQGP  240
ESRYTGGGGG SRENSQQQQQ LNLMADMTTT VVATSSNIGT NMLDPSVYPA PINAFIAGTQ  300
FFPHPRS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5838951e-127JX583895.1 Gossypium hirsutum clone NBRI_GE17047 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452264.10.0PREDICTED: protein SHI RELATED SEQUENCE 7-like
SwissprotQ9LQZ54e-87SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A0D2SKH40.0A0A0D2SKH4_G
STRINGPOPTR_0002s03000.11e-104(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.17e-79SHI-related sequence 5